Labs that are regularly Publishing gene maps:
RNA Sequences | Subviral RNA database | http://132.210.163.235/subviral/home.cgi | Database of viroids and viroid-like RNAs |
CADB | http://144.16.71.148 | Conformation angles of protein structures, with associated crystallographic data | |
Comparative Genomics | ParaDB | http://abi.marseille.inserm.fr/paradb | Paralogy mapping in human genomes |
ALFRED | http://alfred.med.yale.edu/ | Allele frequencies and DNA polymorphisms | |
DPInteract | http://arep.med.harvard.edu/dpinteract/ | Binding sites for E. coli DNA-binding proteins | |
ASTRAL | http://astral.stanford.edu/ | Sequences of domains of known structure, selected subsets, and sequence-structure correspondences | |
Pathology | FIMM | http://baygenomics.ucsf.edu | Identification of genes relevant to cardiovascular and pulmonary disease |
HyPaLib | http://bibiserv.techfak. | Structural elements characteristic for classes of RNA | |
MitoDrome | http://bighost.area.ba.cnr.it/BIG/MitoDrome | Drosophila nuclear genes encoding proteins targeted to the mitochondrion | |
Genomic Databases | AMmtDB | http://bighost.area.ba.cnr.it/mitochondriome | Metazoan mitochondrial genes |
PLMItRNA | http://bighost.area.ba.cnr.it/PLMItRNA/ | Mitochondrial tRNA genes and molecules in photosynthetic eukaryotes | |
Genomic Databases | MitoNuc/MitoAln | http://bighost.area.ba.cnr.it/srs/ | Nuclear genes coding for mitochondrial proteins |
RNA Sequences | UTRdb/UTRsite | http://bighost.area.ba.cnr.it/srs6/ | 5′ and 3′ UTRs of eukaryotic mRNAs and relevant functional patterns |
Biomolecular Interaction Network Database (BIND) | http://binddb.org | Molecular interactions, complexes, and pathways | |
SRPDB | http://bio.lundberg.gu.se/dbs/ | Structural and functional information on signalrecognition particles | |
RNA Sequences | 5S Ribosomal RNA Database | http://biobases.ibch.poznan.pl/5SData | 5S rRNA sequences |
RNA Sequences | Noncoding regulatory RNAs Database | http://biobases.ibch.poznan.pl/ncRNA | Noncoding RNAs with regulatory functions |
RNA Sequences | Collection of mRNA-like Noncoding RNAs | http://biobases.ibch.poznan.pl/ncRNA/ | Non-protein-coding RNA transcripts |
Plant snoRNA DB | http://bioinf.scri.sari.ac.uk/ | snoRNA genes in plant species | |
Mutation Databases | BTKbase | http://bioinf.uta.fi/BTKbase/ | Mutation registry for X-linked agammaglobulinemia |
Mutation Databases | KinMutBase | http://bioinf.uta.fi/KinMutBase/ | Disease-causing protein kinase mutations |
Database of Macromolecular Movements | http://bioinfo.mbb.yale.edu/MolMovDB/ | Descriptions of protein and macromolecular motions, including movies | |
Gene Identification and Structure | PromEC | http://bioinfo.md.huji.ac.il/marg/promec | E. coli mRNA promoters with experimentally identified transcriptional start sites |
Protein Sequence Motifs | TMPDB | http://bioinfo.si.hirosaki-u.ac.jp/~TMPDB | Experimentally-characterized transmembrane topologies |
Genomic Databases | GeneCards | http://bioinfo.weizmann.ac.il/cards | Integrated database of human genes, maps, proteins and diseases |
Genomic Databases | CroW 21 | http://bioinfo.weizmann.ac.il/crow21/ | Human chromosome 21 database |
Protein Databases | HORDE | http://bioinfo.weizmann.ac.il/HORDE/ | Catalog of human genetic and genomic disorders |
Guide RNA Database | http://biosun.bio.tu-darmstadt.de/ | Guide RNA sequences | |
Protein Databases | ESTHER | http://bioweb.ensam.inra.fr/ESTHER/ | Esterases and alpha/beta hydrolase enzymes and relatives |
Tooth Development Database | http://bite-it.helsinki.fi/ | Gene expression in dental tissue | |
Protein Sequence Motifs | BLOCKS | http://blocks.fhcrc.org/ | Conserved sequence regions of protein families |
Genomic Databases | EcoGene | http://bmb.med.miami.edu/EcoGene/EcoWeb/ | E. coli K-12 sequences |
Gene Expression | BodyMap | http://bodymap.ims.u-tokyo.ac.jp/ | Human and mouse gene expression data |
Cytokine Gene Polymorphism in Human Disease | http://bris.ac.uk/pathandmicro/ | Cytokine gene polymorphism literature database | |
Genomic Databases | BSD | http://bsd.cme.msu.edu | Comparative data on known biodegradative organisms |
Gene Expression | ASDB | http://cbcg.nersc.gov/asdb | Protein products and expression patterns of alternatively-spliced genes |
CKAAPs DB | http://ckaap.sdsc.edu | Structurally-similar proteins with dissimilar sequences | |
CE | http://cl.sdsc.edu/ce.html | Combinatorial Extension: A Resource to Compute and Review 3-D Protein Structure Alignments | |
Genomic Databases | CnidBase | http://cnidbase.bu.edu/ | Cnidarian evolutionary genomics and gene expression |
Mutation Databases | SV40 Large T-Antigen Mutant Database | http://colon.bio.pitt.edu:5243/SV40/index.html | Mutations in SV40 large tumor antigen gene |
Gene Identification and Structure | COMPEL | http://compel.bionet.nsc.ru/ | Database on composite regulatory elements affecting gene transcription in eukaryotes |
Mutation Databases | Asthma Gene Database | http://cooke.gsf.de/asthmagen/main.cfm | Linkage and mutation studies on the genetics of asthma and allergy |
Comparative Genomics | CORG | http://corg.molgen.mpg.de | Conserved non-coding sequence blocks |
Protein Sequence Motifs | ASC-Active Sequence Collection | http://crisceb.unina2.it/ASC/ | Biologically-active short amino acid sequences |
Protein Sequence Motifs | NLSdb | http://cubic.bioc.columbia.edu/db/NLSdb | Nuclear localization signals |
Proteome Resources | PEP: Predictions for Entire Proteomes | http://cubic.bioc.columbia.edu/pep/ | Signalling domain sequences |
Decoys ‘R’ Us | http://dd.stanford.edu/ | Computer-generated protein conformations based on sequence data | |
Protein Databases | Prolysis | http://delphi.phys.univ-tours.fr/Prolysis/ | Proteases and natural and synthetic protease inhibitors |
DIP | http://dip.doe-mbi.ucla.edu/ | Catalog of protein-protein interactions | |
Metabolic Pathways and Cellular Regulation | MetaCyc | http://ecocyc.org | Metabolic pathways and enzymes from various organisms |
Metabolic Pathways and Cellular Regulation | EcoCyc | http://ecocyc.org/ | E. coli K-12 genome, gene products, and metabolic pathways |
Gene Identification and Structure | DBTBS | http://elmo.ims.u-tokyo.ac.jp/dbtbs/ | Bacillus subtilis promoters and transcription factors |
Genomic Databases | ERGO | http://ergo.integratedgenomics.com/ERGO | Integrated biological data from genomic, biochemical, expression, and genetic experiments, and from the literature |
FAMSBASE | http://famsbase.bio.nagoya-u.ac.jp/ | Protein three-dimensional structural models | |
Protein Databases | SDAP | http://fermi.utmb.edu/SDAP | Sequences, structures and IgE epitopes of allergenic proteins |
Pathology | INFEVERS | http://fmf.igh.cnrs.fr/infevers | Familial Mediterranean Fever and hereditary inflammatory disorder mutation data |
Pathology | MetaFMF | http://fmf.igh.cnrs.fr/metaFMF/index_us.html | Familial Mediterranean Fever phenotype-genotype correlation |
Genomic Databases | Full-Malaria | http://fullmal.ims.u-tokyo.ac.jp | Full-length cDNA library from erythrocytic-stage Plasmodium falciparum |
Proteome Resources | GELBANK | http://gelbank.anl.gov | 2D-gel electrophoresis patterns from completed genomes |
Genetic and Physical Maps | GeneLoc | http://genecards.weizmann.ac.il/udb/ | Integrated human maps |
Gene Expression | Mouse Atlas and Gene Expression Database | http://genex.hgu.mrc.ac.uk | Spatially-mapped gene expression data |
SubtiList | http://genolist.pasteur.fr/SubtiList | Bacillus subtilis genome | |
Protein Databases | Histone Database | http://genome.nhgri.nih.gov/histones/ | Histone and histone fold sequences and structures |
Protein Databases | Homeodomain Resource | http://genome.nhgri.nih.gov/homeodomain | Homeodomain sequences, structures, and related genetic and genomic information |
Non-redundant, gene-oriented clusters: | UCSC Genome Browser | http://genome.ucsc.edu/ | Genome assemblies and annotation |
Gene Expression | Stanford Microarray Database | http://genome-www.stanford.edu/microarray | Raw and normalized data from microarray experiments |
Saccharomyces Genome Database (SGD) | http://genome-www.stanford.edu/Saccharomyces | Saccharomyces cerevisiae genome | |
Genetic and Physical Maps | GenMapDB | http://genomics.med.upenn.edu/genmapdb | Mapped human BAC clones |
GĂ©noPlante-Info | http://genoplante-info.infobiogen.fr | Plant genomic data derived from the GĂ©noplante consortium | |
FLAGdb/FST | http://genoplante-info.infobiogen.fr | Arabidopsis thaliana T-DNA transformants | |
Protein Databases | GenProtEC | http://genprotec.mbl.edu | Escherichia coli K-12 genome, gene products, and homologs |
Pathology | GOLD.db | http://gold.tugraz.at | Genes, proteins, and pathways implicated in lipid-associated disorders |
Kidney Development Database | http://golgi.ana.ed.ac.uk/kidhome.html | Kidney development and gene expression | |
Gene Identification and Structure | Gene Resource Locator | http://grl.gi.u-tokyo.ac.jp | Alignment of ESTs with finished human sequence |
ModBase | http://guitar.rockefeller.edu/modbase | Annotated comparative protein structure models | |
Mutation Databases | HGVbase | http://hgvbase.cgb.ki.se/ | Human Genome Variation database |
Protein Databases | trEST, trGEN and Hits | http://hits.isb-sib.ch | Predicted protein sequences |
Protein Databases | HIV RT and Protease Sequence Database | http://hivdb.stanford.edu | HIV reverse transcriptase and protease sequences |
Mutation Databases | HIV-RT | http://hivdb.stanford.edu/hiv/ | HIV reverse transcriptase and protease sequence variation |
HIV Sequence Database | http://hiv-web.lanl.gov/ | HIV RNA sequences | |
Protein Databases | HIV Molecular Immunology Database | http://hiv-web.lanl.gov/immunology/ | HIV epitopes |
Protein Databases | Homeobox Page | http://homeobox.biosci.ki.se | Information relevant to homeobox proteins, classification, and evolution |
Comparative Genomics | Homophila | http://homophila.sdsc.edu | Relationship of human disease genes to genes in Drosophila |
HugeIndex | http://hugeindex.org | mRNA expression levels of human genes in normal tissues | |
IRESdb | http://ifr31w3.toulouse.inserm.fr/ | Internal ribosome entry sites | |
Genomic Databases | GOLD | http://igweb.integratedgenomics.com/GOLD/ | Information regarding complete and ongoing genome projects |
Protein Databases | IMGT | http://imgt.cines.fr:8104/ | Immunoglobulin, T cell receptor, and MHC sequences from human and other vertebrates |
Kabat Database | http://immuno.bme.nwu.edu/ | Sequences of proteins of immunological interest | |
Mutation Databases | Mutation Spectra Database | http://info.med.yale.edu/mutbase/ | Mutations in viral, bacterial, yeast, and mammalian genes |
InterDom | http://InterDom.lit.org.sg | Putative protein domain interactions | |
Gene Identification and Structure | ExInt | http://intron.bic.nus.edu.sg/exint/exint.html | Exon-intron structure of eukaryotic genes |
Protein Databases | ABCdb | http://ir2lcb.cnrs-mrs.fr/ABCdb/ | ABC transporters |
Genetic and Physical Maps | IXDB | http://ixdb.mpimg-berlin-dahlem.mpg.de | Physical maps of human chromosome X |
Vectordb | http://life.nthu.edu.tw/ | Characterization and classification of nucleic acid vectors | |
WILMA | http://lore.came.sbg.ac.at:8080/ | Caenorhabditis elegans annotation | |
DAtA | http://luggagefast.Stanford.EDU/ | Annotated coding sequences from Arabidopsis | |
RNA Sequences | Small RNA Database | http://mbcr.bcm.tmc.edu/smallRNA | Direct sequencing of small RNA sequences from prokaryotes and eukaryotes |
Comparative Genomics | MBGD | http://mbgd.genome.ad.jp | Microbial genome database for comparative genomic analysis |
Gene Identification and Structure | EID | http://mcb.harvard.edu/gilbert/EID/ | Protein-coding, intron-containing genes |
MEPD | http://medaka.dsp.jst.go.jp/MEPD | Gene expression data from the small freshwater fish Medaka | |
RNA Sequences | RNA Modification Database | http://medlib.med.utah.edu/RNAmods/ | Naturally modified nucleosides in RNA |
GOBASE | http://megasun.bch.umontreal.ca/ | Organelle genome database | |
Gene Identification and Structure | PlantProm | http://mendel.cs.rhul.ac.uk/ | Proximal promoter sequences for RNA polymerase II |
MetaFam | http://metafam.ahc.umn.edu/ | Integrated protein family information | |
Mutation Databases | p53 Databases | http://metalab.unc.edu/dnam/mainpage.html | Mutations at the human p53 and hprt genes; rodent transgenic lacI and lacZ mutations |
Metalloprotein Database and Browser | http://metallo.scripps.edu/ | Metal-binding sites in metalloproteins | |
Protein Databases | PROMISE | http://metallo.scripps.edu/PROMISE/ | Prosthetic centers and metal ions in protein active sites |
MPIMP | http://millar3.biochem.uwa.edu.au/ | Mitochondrial protein import machinery of plants | |
Genomic Databases | MITOP | http://mips.gsf.de/proj/medgen/mitop/ | Mitochondrial proteins, genes, and diseases |
Genomic Databases | MOsDB | http://mips.gsf.de/proj/rice | Oryza sativa genome |
Gene Identification and Structure | Sputnik | http://mips.gsf.de/proj/sputnik | Functional annotation of clustered plant ESTs |
RsGDB | http://mmg.uth.tmc.edu/sphaeroides | Rhodobacter sphaeroides genome | |
MolMovDB | http://MolMovDB.org | Database of macromolecular movements | |
Protein Sequence Motifs | eMOTIF | http://motif.stanford.edu/emotif | Protein sequence motif determination and searches |
Gene Expression | MTID | http://mouse.ccgb.umn.edu/transposon/ | Sleeping beauty transposon insertion in mice |
PASS2 | http://ncbs.res.in/%7Efaculty/ | Structural motifs of protein superfamilies | |
NDB | http://ndbserver.rutgers.edu/ | Nucleic acid-containing structures | |
Protein Databases | Nuclear Protein Database (NPD) | http://npd.hgu.mrc.ac.uk | Proteins localized in the nucleus |
Nuclear Receptor Resource | http://nrr.georgetown.edu/nrr/nrr.html | Nuclear receptor superfamily | |
NTDB | http://ntdb.chem.cuhk.edu.hk | Thermodynamic data for nucleic acids | |
Gene Identification and Structure | IDB/IEDB | http://nutmeg.bio.indiana.edu/intron/index.html | Intron sequence and evolution |
European Ribosomal RNA Database | http://oberon.rug.ac.be:8080/ | Alignment of ribosomal RNA sequences with secondary structure information | |
Gene Identification and Structure | PlantCARE | http://oberon.rug.ac.be:8080/PlantCARE/index.html | Plant transcription sites |
PANTHER | http://panther.celera.com | Gene products organized by biological function | |
PALI | http://pauling.mbu.iisc.ernet.in/~pali | Phylogeny and alignment of homologous protein structures | |
Protein Sequence Motifs | SUPFAM | http://pauling.mbu.iisc.ernet.in/~supfam | Grouping of sequence families into superfamilies |
Genomic Databases | EMGlib | http://pbil.univ-lyon1.fr/emglib/emglib.html | Completely sequenced microbial genomes from bacteria, archaea, yeast |
Genomic Databases | NRSub | http://pbil.univ-lyon1.fr/nrsub/nrsub.html | Bacillus subtilis genome |
Protein Databases | RTKdb | http://pbil.univ-lyon1.fr/RTKdb | Receptor tyrosine kinase sequences |
Gene Expression | FlyView | http://pbio07.uni-muenster.de/ | Drosophila development and genetics |
Genomic Databases | PEDANT genome database | http://pedant.gsf.de | Automated analysis of genomic sequences |
Protein Databases | Protein Information Resource (PIR) | http://pir.georgetown.edu | Comprehensive, annotated, non-redundant protein sequence database |
ProClass | http://pir.georgetown.edu/ | Protein families defined by PIR superfamilies and PROSITE patterns | |
Protein Databases | PIR-NREF | http://pir.georgetown.edu/pirwww/pirnref.shtml | Non-redundant reference database with comprehensive protein sequences |
Protein Databases | PKR | http://pkr.sdsc.edu/html/index.shtml | Protein kinase sequences, enzymology, genetics, and molecular and structural properties |
Protein Databases | PlantsP/PlantsT | http://plantsp.sdsc.edu | Functional genomics databases focusing on protein involved in plant phosphorylation and membrane transport |
PlasmoDB | http://PlasmoDB.org | The Plasmodium falciparum Genome Database | |
Mutation Databases | PMD | http://pmd.ddbj.nig.ac.jp/ | Compilation of protein mutant data |
PRESAGE | http://presage.berkeley.edu/ | Protein structures with experimental and predictive annotations | |
RNA Sequences | NCIR | http://prion.bchs.uh.edu/bp_type/ | Non-standard base-base interactions in known RNA structures |
ProDom | http://prodes.toulouse.inra.fr/prodom/ | Protein domain families | |
Metabolic Pathways and Cellular Regulation | PRODORIC | http://prodoric.tu-bs.de | Prokaryotic database of gene regulation and regulatory networks |
DSMM | http://projects.eml.org/mcm/database/dsmm | Database of simulated molecular motions | |
Protein Sequence Motifs | ProtoMap | http://protomap.cornell.edu | Automated hierarchical classification of SWISS-PROT proteins |
SRPDB | http://psyche.uthct.edu/dbs/ | Signal recognition particle RNA, SRP protein and SRP receptor sequences and alignments | |
tmRDB | http://psyche.uthct.edu/dbs/ | tmRNA (10Sa RNA) sequences and alignments | |
RNA Sequences | ARED | http://rc.kfshrc.edu.sa/ared/ | AU-rich element-containing mRNAs |
RNA Sequences | Ribosomal Database Project (RDP II) | http://rdb.cme.msu.edu | rRNA sequence data, analysis tools, alignments and phylogenies |
Proteome Resources | REBASE | http://rebase.neb.com/rebase/rebase.html | Restriction enzymes and associated methylases |
Gene Expression | RECODE | http://recode.genetics.utah.edu | Genes using programmed translational recoding in their expression |
Rat Genome Database | http://rgd.mcw.edu | Rat genetic and genomic data | |
Genomic Databases | INE | http://rgp.dna.affrc.go.jp/giot/INE.html | Rice genetic and physical maps and sequence data |
Rice GAAS | http://RiceGaas.dna.affrc.go.jp/ | Rice genome sequence | |
Protein Databases | AARSDB | http://rose.man.poznan.pl/aars/index.html | Aminoacyl-tRNA synthetase sequences |
Gene Identification and Structure | RRNDB | http://rrndb.cme.msu.edu | Variation in prokaryotic ribosomal RNA operons |
SCOP | http://scop.mrc-lmb.cam.ac.uk/scop/ | Familial and structural protein relationships | |
SCOR | http://scor.lbl.gov | RNA structural relationships | |
Olfactory Receptor Database | http://senselab.med.yale.edu/senselab/ | Sequences for olfactory receptor-like molecules | |
SEVENS | http://sevens.cbrc.jp | 7-transmembrane helix receptors | |
Protein Sequence Motifs | SMART | http://smart.embl-heidelberg.de/ | Signalling domain sequences |
Gene Identification and Structure | SNP Consortium database | http://snp.cshl.org | Single Nucleotide Polymorphisms for biomedical research |
SOURCE | http://source.stanford.edu | Functional genomic resource for annotations ontologies, and expression data | |
PPMdb | http://sphinx.rug.ac.be:8080/ | Arabidopsis plasma membrane protein sequence and expression data | |
GTOP | http://spock.genes.nig.ac.jp/ | Structures of small molecules (hetero-compounds) | |
PDBsum | http://srs.ebi.ac.uk/ | Molecular Probe Database | |
PSSH | http://srs3d.ebi.ac.uk/ | Alignment between protein sequences and tertiary structures | |
Structure-Superposition Database | http://ssd.rbvi.ucsf.edu | Pairwise superposition of TIM-barrel structures | |
SUPERFAMILY | http://supfam.org | Assignments of proteins to structural superfamilies | |
MHC-Peptide Interaction Database | http://surya.bic.nus.edu.sg/mpid | Class I and class II MHC-peptide complexes | |
Protein Sequence Motifs | SYSTERS | http://systers.molgen.mpg.de/ | Classification of protein sequences into disjoint clusters with annotations from various other resources |
Transgenic/Targeted Mutation Database | http://tbase.jax.org/ | Information on transgenic animals and targeted mutations | |
Mutation Databases | GRAP Mutant Databases | http://tinyGRAP.uit.no/GRAP/ | Mutants of family A G-Protein Coupled Receptors (GRAP) |
Tree of Life | http://tolweb.org/tree/phylogeny.html | Information on phylogeny and biodiversity | |
Genomic Databases | ToxoDB: The Toxoplasma gondii Genome Database | http://ToxoDB.org | Apicomplexan parasite Toxoplasma gondii genome |
TRANSFAC | http://transfac.gbf.de/TRANSFAC/index.html | Transcription factors and binding sites | |
Pathology | Mouse Tumor Biology Database (MTB) | http://tumor.informatics.jax.org | Mouse tumor names, classification, incidence, pathology, genetic factors |
Genomic Databases | CropNet | http://ukcrop.net/ | Genome mapping in crop plants |
RNA Sequences | RISCC | http://ulises.umh.es/RISSC | Ribosomal 16S-23S RNA gene spacer regions |
Metabolic Pathways and Cellular Regulation | The University of Minnesota Biocatalysis Biodegradation Database | http://umbbd.ahc.umn.edu/ | Curated information on microbial catabolism and related biotransformations |
Gene Identification and Structure | TransTerm | http://uther.otago.ac.nz/Transterm.html | Codon usage, start and stop signals |
VirOligo | http://viroligo.okstate.edu | Virus-specific oligonucleotides for PCR and hybridization | |
MHCPEP | http://wehih.wehi.edu.au/mhcpep/ | MHC-binding peptides | |
WIT2 | http://wit.mcs.anl.gov/WIT2/ | Integrated system for functional curation and development of metabolic models | |
WorfDB | http://worf.dfci.harvard.edu | Caenorhabditis elegans ORFeome | |
Gene Expression | NetAffix | http://www.affymetrics.com | Public Affymetrix probesets and annotations |
Gene Identification and Structure | AllGenes | http://www.allgenes.org | Human and mouse gene index integrating gene, transcript and protein annotation |
Mutation Databases | Online Mendelian Inheritance in Animals | http://www.angis.org.au/omia | Catalog of animal genetic and genomic disorders |
The Arabidopsis Information Resource (TAIR) | http://www.arabidopsis.org | Arabidopsis thaliana genome | |
Protein Databases | AraC/XylS database | http://www.AraC-XylS.org | AraC/XylS protein family of positive regulators in bacteria |
Yeast snoRNA Database | http://www.bio.umass.edu/biochem/ | Yeast small nucleolar RNAs | |
TRANSPATH | http://www.biobase.de/pages/ | Gene regulatory networks and microarray analysis | |
VIDA | http://www.biochem.ucl.ac.uk/ | Virus genome open reading frames | |
Gene3D | http://www.biochem.ucl.ac.uk/bsm | Precalculated structural assignments for genes within whole genomes | |
VIDA | http://www.biochem.ucl.ac.uk/bsm/ | Homologous viral protein families | |
CATH | http://www.biochem.ucl.ac.uk/bsm/cath/ | Hierarchical classification of protein domain structures | |
PDBsum | http://www.biochem.ucl.ac.uk/bsm/pdbsum | Summaries and analyses of PDB structures | |
Metabolic Pathways and Cellular Regulation | Klotho | http://www.biocheminfo.org/klotho | Collection and categorization of biological compounds |
BioImage | http://www.bioimage.org | Searchable database of multidimensional biological images | |
PRINTS | http://www.bioinf.man.ac.uk/ | Hierarchical gene family fingerprints | |
Genomic Databases | OGRe | http://www.bioinf.man.ac.uk/ogre | Complete mitochondrial genome sequences for 200 metazoan species |
Gene Identification and Structure | ASAP | http://www.bioinformatics.ucla.edu/ASAP | Alternative spliced isoforms |
Protein Databases | Endogenous GPCR List | http://www.biomedcomp.com/GPCR.html | G protein-coupled receptors; expression in cell lines |
Gene Identification and Structure | PACRAT | http://www.biosci.ohio-state.edu/~pacrat | Archaeal and bacterial intergenic sequence features |
MPDB | http://www.biotech.ist.unige.it/ | Information on synthetic oligonucleotides proven useful as primers or probes | |
BioMagResBank | http://www.bmrb.wisc.edu/ | NMR spectroscopic data from proteins, peptides, and nucleic acids | |
STRING | http://www.bork.embl-heidelberg.de/STRING/ | Predicted functional associations between proteins | |
Cytokine Gene Polymorphism Database | http://www.bris.ac.uk/pathandmicro/ | Cytokine gene polymorphisms, in vitro expression and disease-association studies | |
Mutation Databases | CASRDB | http://www.casrdb.mcgill.ca/ | Calcium Sensing Receptor Locus Mutation Database |
Genomic Databases | CATMA | http://www.catma.org | Arabidopsis gene sequence tags (GSTs) |
expression | EPConDB | http://www.cbil.upenn.edu/EPConDB | Endocrine pancreas consortium database |
Metabolic Pathways and Cellular Regulation | EpoDB | http://www.cbil.upenn.edu/EpoDB/ | Genes expressed during human erythropoiesis |
EpoDB | http://www.cbil.upenn.edu/EpoDB/index.html | Genes expressed in vertebrate red blood cells | |
TESS | http://www.cbil.upenn.edu/tess | Transcription element search system | |
PDB-REPRDB | http://www.cbrc.jp/papia/papia.html | Representative protein chains, based on PDB entries | |
PhosphoBase | http://www.cbs.dtu.dk/ | Protein phosphorylation sites | |
Protein Sequence Motifs | NESbase | http://www.cbs.dtu.dk/databases/NESbase | Nuclear export signals |
Protein Sequence Motifs | O-GLYCBASE | http://www.cbs.dtu.dk/databases/OGLYCBASE/ | Glycoproteins and O-linked glycosylation sites |
CSD | http://www.ccdc.cam.ac.uk/ | Crystal structure information for organic and metal organic compounds | |
Gene Identification and Structure | MICdb | http://www.cdfd.org.in/micas | Prokaryotic microsattelites |
Protein Databases | CSDBase | http://www.chemie.uni-marburg.de/~csdbase | Cold shock domain-containing proteins |
RegulonDB | http://www.cifn.unam.mx/ | E. coli transcriptional regulation and operon organization | |
Protein Databases | FUNPEP | http://www.cmbi.kun.nl/swift/FUNPEP/library/ | Low-complexity or compositionally-biased protein sequences |
Protein Databases | EXProt | http://www.cmbi.nl/exprot | Proteins with experimentally-verified function |
Peptaibol | http://www.cryst.bbk.ac.uk/ | Peptaibol (antibiotic peptide) sequences | |
Intronerator | http://www.cse.ucsc.edu/ | RNA splicing and gene structure in C. elegans; alignments of C. briggsae and C. elegans genomic sequences | |
Ares Lab Intron Site | http://www.cse.ucsc.edu/research/ | Yeast spliceosomal introns | |
STRBase | http://www.cstl.nist.gov/div831/strbase/ | Short tandem DNA repeats | |
Mutation Databases | PTCH Mutation Database | http://www.cybergene.se/PTCH/ptchbase.html | Mutations and SNPs found in PTCH1 |
Axeldb | http://www.dkfz-heidelberg.de/ | Gene expression in Xenopus | |
SWEET-DB | http://www.dkfz-heidelberg.de/ | Annotated carbohydrate structure and substance information | |
Mutation Databases | RB1 Gene Mutation Database | http://www.d-lohmann.de/Rb/ | Mutations in the human retinoblastoma (RB1) gene |
Gene Identification and Structure | PLACE | http://www.dna.affrc.go.jp/htdocs/PLACE | Plant cis-acting regulatory elements |
Genetic and Physical Maps | GenAtlas | http://www.dsi.univ-paris5.fr/genatlas/ | Human genes, markers, and phenotypes |
Gene Expression | ArrayExpress | http://www.ebi.ac.uk.arrayexpress | Public collection of microarray gene expression data |
Protein Sequence Motifs | CluSTr | http://www.ebi.ac.uk/clustr/ | Automatic classification of SWISS-PROT + TrEMBL proteins into related groups |
International Nucleotide Sequence Database Collaboration: | EMBL Nucleotide Sequence Database | http://www.ebi.ac.uk/embl/ | All known nucleotide and protein sequences |
Protein Databases | IMGT/HLA | http://www.ebi.ac.uk/imgt/hla/ | Human major histocompatibility comples |
Protein Databases | IMGT/MHC Database | http://www.ebi.ac.uk/imgt/mhc | Major histocompatibility complex sequences |
Protein Databases | InterPro | http://www.ebi.ac.uk/interpro | Protein families and domains |
Protein Sequence Motifs | InterPro | http://www.ebi.ac.uk/interpro/ | Integrated documentation resource for protein families, domains, and sites |
E-MSD | http://www.ebi.ac.uk/msd | Collected data on macromolecular structures | |
Proteome Resources | Proteome Analysis Database | http://www.ebi.ac.uk/proteome/ | Online application of interpro and clustr for the functional classification of proteins in whole genomes |
Genetic and Physical Maps | RHdb | http://www.ebi.ac.uk/RHdb | Radiation hybrid map data |
Non-redundant, gene-oriented clusters: | Ensembl | http://www.ensembl.org | Annotated information on eukaryotic genomes |
NUREBASE | http://www.ens-lyon.fr/LBMC/ | Nuclear Receptor dataBase | |
Gene Identification and Structure | EPD | http://www.epd.isb-sib.ch/ | Eukaryotic POL II promoters with experimentally-determined transcription start sites |
Proteome Resources | SWISS-2DPAGE | http://www.expasy.ch/ch2d/ | Annotated two-dimensional polyacrylamide gel electrophoresis database |
Metabolic Pathways and Cellular Regulation | ENZYME | http://www.expasy.ch/enzyme/ | Enzyme nomenclature |
Protein Sequence Motifs | PROSITE | http://www.expasy.ch/prosite/ | Biologically-significant protein patterns and profiles |
Protein Databases | SWISS-PROT/TrEMBL | http://www.expasy.ch/sprot | Curated protein sequences |
16S and 23S Ribosomal RNA Mutation Database | http://www.fandm.edu/Departments/ | 16S and 23S rRNA mutations | |
RNA Sequences | Database for mobile group II introns | http://www.fp.ucalgary.ca/group2introns | Database for mobile group II introns |
Genomic Databases | FlyBase | http://www.fruitfly.org | Drosophila sequences and genomic information |
Genomic Databases | HGT-DB | http://www.fut.es/~debb/HGT/ | Putative horizontally-transferred genes in prokaryotic genomes |
Genetic and Physical Maps | GDB | http://www.gdb.org | Human genes and genomic maps |
Genew | http://www.gene.ucl.ac.uk./cgi-bin/ | Approved symbols for all human genes | |
TRANSCompel | http://www.gene-regulation.com/pub/ | Composite regulatory elements | |
Proteome Resources | AAindex | http://www.genome.ad.jp/dbget/ | Physicochemical properties of peptides |
Metabolic Pathways and Cellular Regulation | LIGAND | http://www.genome.ad.jp/dbget/ligand.html | Enzymatic ligands, substrates, and reactions |
Metabolic Pathways and Cellular Regulation | Kyoto Encyclopedia of Genes and Genomes (KEGG) | http://www.genome.ad.jp/kegg/ | Metabolic and regulatory pathways |
MAGEST | http://www.genome.ad.jp/magest/ | Maboya ( the ascidian, Halocynthia roretzi ) Gene Expression patterns and Sequence Tags | |
GlycoSuiteDB | http://www.glycosuite.com | N- and O-linked glycan structures and biological source information | |
Protein Databases | GPCRDB | http://www.gpcr.org/7tm/ | G protein-coupled receptors |
GrainGenes | http://www.graingenes.org | Genomic database for small-grain crops | |
Protein Databases | DExH/D Family Database | http://www.helicase.net/dexhd/dbhome.htm | DEAD-box, DEAH-box, and DExH-box proteins |
Mutation Databases | Human Gene Mutation Database (HGMD) | http://www.hgmd.org | Known (published) gene lesions underlying human inherited disease |
Mutation Databases | Human PAX2 Allelic Variant Database | http://www.hgu.mrc.ac.uk/Softdata/PAX2/ | Mutations in human PAX2 gene |
Mutation Databases | Human PAX6 Allelic Variant Database | http://www.hgu.mrc.ac.uk/Softdata/PAX6/ | Mutations in human PAX6 gene |
Gene Identification and Structure | HUNT | http://www.hri.co.jp/HUNT | Annotated human full-length cDNA sequences |
Mutation Databases | HvrBase | http://www.hvrbase.de | Primate mtDNA control region sequences |
Gene Identification and Structure | HvrBase | http://www.hvrbase.org | Primate mtDNA control region sequences |
Mutation Databases | iARC p53 Database | http://www.iarc.fr/p53/ | Missense mutations and small deletions in human p53 reported in peer-reviewed literature |
Mutation Databases | Human p53/hprt, rodent lacI/lacZ databases | http://www.ibiblio.org/dnam/mainpage.html | Mutationsat the human p53 and hprt genes; rodent transgenic lacI and lacZ mutations |
HOX-PRO | http://www.iephb.nw.ru/labs/lab38/ | Clustering of homeobox genes | |
Protein Databases | ooTFD | http://www.ifti.org | Transcription factors and gene expression |
Gene Expression | MIRAGE | http://www.ifti.org/ | Molecular informatics resource for the analysis of gene expression |
IMB Jena Image Library of Biological Macromolecules | http://www.imb-jena.de/IMAGE.html | Visualization and analysis of three-dimensional biopolymer structures | |
The tmRNA Website | http://www.indiana.edu/~tmrna | tmRNA sequences, foldings, and alignments | |
Atlas of Genetics and Cytogenetics in Oncology and Haematology | http://www.infobiogen.fr/ | Chromosomal abnormalities in cancer | |
DBcat | http://www.infobiogen.fr/services/dbcat/ | Catalog of databases | |
Genetic and Physical Maps | Genetpig | http://www.infobiogen.fr/services/Genetpig | Genetic mapping in pig |
Genetic and Physical Maps | HuGeMap | http://www.infobiogen.fr/services/Hugemap | Human genome genetic and physical map data |
Virgil | http://www.infobiogen.fr/services/virgil | Database interconnectivity | |
Genomic Databases | Mouse Genome Database (MGD) | http://www.informatics.jax.org | Mouse genetics and genomics |
Gene Expression Database (GXD) | http://www.informatics.jax.org/ | Mouse gene expression and genomics | |
Genomic Databases | IRIS | http://www.iris.irri.org | Rice germplasm geneology and field data; rice structural and functional genomics and proteomics |
Non-redundant, gene-oriented clusters: | H-InvDB | http://www.jbirc.aist.go.jp/hinv/index.jsp | Human gene database, with Integrative Annotation Validated by Full-Length cDNA Clones |
JenPep | http://www.jenner.ac.uk/Jenpep2 | Functional and quantitative thermodynamic data on peptide binding to immunological biomacromolecules | |
Gene Identification and Structure | CUTG | http://www.kazusa.or.jp/codon/ | Codon usage tables |
Genomic Databases | CyanoBase | http://www.kazusa.or.jp/cyano/ | Synechocystis sp. genome |
Protein Databases | HUGE | http://www.kazusa.or.jp/huge/ | Large (50 kDa) human proteins and cDNA sequences |
Haemophila B Mutation Database | http://www.kcl.ac.uk/ip/ | Point mutations, short additions, and deletions in the Factor IX gene | |
UM-BBD | http://www.labmed.umn.edu/umbbd/ | Microbial biocatalytic reactions and biodegradation pathways | |
Mutation Databases | Human Type I and Type III Collagen Mutation Database | http://www.le.ac.uk/genetics/collagen/ | Human type I and type III collagen gene mutations |
Lipase Engineering Database | http://www.led.uni-stuttgart.de/ | Integrated information on sequence, structure and function of lipases and esterases | |
Interferon Stimulated Gene Database | http://www.lerner.ccf.org/ | Genes induced by treatment with interferons | |
Database of Germline p53 Mutations | http://www.lf2.cuni.cz/ | Mutations in human tumor and cell line p53 gene | |
Genomic Databases | ICB | http://www.mbio.co.jp/icb | Identification and classification of bacteria using protein-coding |
Protein Databases | Ribonuclease P Database | http://www.mbio.ncsu.edu/RNaseP/home.html | RNase P sequences, alignments, and structures |
Androgen Receptor Gene Mutations Database | http://www.mcgill.ca/androgendb/ | Mutations in the androgen receptor gene | |
Genomic Databases | MtDB | http://www.medicago.org/MtDB | Medicago trunculata genome |
Genomic Databases | Mendel Database | http://www.mendel.ac.uk/ | Database of plant EST and STS sequences annotated with gene family information |
MEROPS | http://www.merops.co.uk | Proteolytic enzymes (proteases/peptidases) | |
Gene Expression | MethDB | http://www.methdb.de | DNA methylation data, patterns, and profiles |
probeBase | http://www.microbial-ecology.net/ | rRNA-targeted oligonucleotide probe sequences, DNA microarray layouts and associated information | |
Genomic Databases | MIPS | http://www.mips.biochem.mpg.de/ | Protein and genomic sequences |
Genomic Databases | Munich Information Center for Protein Sequences (MIPS) | http://www.mips.biochem.mpg.de/ | Protein and genomic sequences |
Genomic Databases | MITOMAP | http://www.mitomap.org | Human mitochondrial genome |
Database of Ribosomal Crosslinks (DRC) | http://www.mpimg-berlin-dahlem.mpg.de/ | Ribosomal crosslinking data | |
Cre Transgenic Database | http://www.mshri.on.ca/nagy/ | Cre transgenic mouse lines | |
RefSeq | http://www.ncbi.nih.gov/RefSeq/ | Reference sequence standards for genomes, genes, transcripts and proteins | |
International Nucleotide Sequence Database Collaboration: | GenBank | http://www.ncbi.nlm.nih.gov/ | All known nucleotide and protein sequences |
NCBI Taxonomy Browser | http://www.ncbi.nlm.nih.gov/ | Names of all organisms that are represented in the genetic databases with at least one nucleotide or protein sequence | |
Comparative Genomics | Clusters of Orthologous Groups (COG) | http://www.ncbi.nlm.nih.gov/COG/ | Phylogenetic classification of proteins from 43 complete genomes |
Genetic and Physical Maps | GeneMap ’99 | http://www.ncbi.nlm.nih.gov/genemap/ | International Radiation Mapping Consortium human gene map |
LocusLink/RefSeq | http://www.ncbi.nlm.nih.gov/LocusLink/ | Curated sequence and descriptive information about genetic loci | |
Mutation Databases | Online Mendelian Inheritance in Man | http://www.ncbi.nlm.nih.gov/Omim/ | Catalog of human genetic and genomic disorders |
Pathology | BayGenomics | http://www.ncbi.nlm.nih.gov/Omim/ | Catalog of human genetic and genomic disorders |
PubMed | http://www.ncbi.nlm.nih.gov/PubMed/ | MEDLINE and Pre-MEDLINE citations | |
Mutation Databases | dbSNP | http://www.ncbi.nlm.nih.gov/SNP/ | Single nucleotidepolymorphisms |
CDD | http://www.ncbi.nlm.nih.gov/Structure/ | Alignment models for conserved protein domains | |
MMDB | http://www.ncbi.nlm.nih.gov/Structure/ | All experimentally-determined three-dimensional structures, linked to NCBI Entrez | |
Non-redundant, gene-oriented clusters: | UniGene | http://www.ncbi.nlm.nih.gov/UniGene/ | GenBank sequences partitioned into a non-redundant set |
Comparative Genomics | XREFdb | http://www.ncbi.nlm.nih.gov/XREFdb/ | Cross-referencing of model organism genetics with mammalian phenotypes |
DSDBASE | http://www.ncbs.res.in/%7Efaculty/ | Native and modeled disulfide bonds in proteins | |
Metabolic Pathways and Cellular Regulation | PathDB | http://www.ncgr.org/pathdb | Biochemical pathways, compounds and metabolism |
Protein Databases | InBase | http://www.neb.com/neb/inteins.html | Intervening protein sequences (inteins) and motifs |
Genomic Databases | Medicago Genome Initiative | http://www.noble.org/medicago/ | Model legume Medicago truncatula ESTs, gene expression, and proteomic data |
Imprinted Genes and Parent-of-Origin Effects | http://www.otago.ac.nz/IGC | Imprinted genes and parent-of-origin effects in animals | |
Mutation Databases | PAHdb | http://www.pahdb.mcgill.ca/ | Mutations at the phenylalanine hydroxylase locus |
LGICdb | http://www.pasteur.fr/ | Ligand-gated ion channel subunit sequences | |
Gene Expression | PEDB | http://www.pedb.org/ | Normal and aberrant prostate gene expression |
Pathology | PEDB | http://www.pedb.org/ | Sequences from prostate tissue and cell type-specific cDNA libraries |
The Pharmacogenomics and Pharmacogenetics Knowledge Base | http://www.pharmgkb.org | Variation in drug response based on human variation | |
Mutation Databases | PHEXdb | http://www.phexdb.mcgill.ca/ | Mutations in PHEX gene causing X-linked hypophosphatemia |
RNA Sequences | Noncoding regulatory RNAs database | http://www.prl.msu.edu/PLANTncRNAs/ | Plant non-protein coding RNAs with relevant gene expression information |
ISSD | http://www.protein.bio.msu.su/issd/ | Integrated sequence and structural information | |
Proteome BioKnowledge Library | http://www.proteome.com | Model organism pathogen, and mammalian proteomes | |
Protein Databases | ProtoNet | http://www.protonet.cs.huji.ac.il/ | Hierarchical clustering of SWISS-PROT |
PDB | http://www.rcsb.org/pdb/ | Structure data determined by X-ray crystallography and NMR | |
Gene Identification and Structure | RTPrimerDB | http://www.realtimeprimerdatabase.ht.st/ | Validated PCR primer and probe sequence records |
RTPrimerDB | http://www.realtimeprimerdatabase.ht.st/ | Validated PCR primer and probe sequence records | |
Protein Databases | NRMD | http://www.receptors.org/NR/ | An Information System for Nuclear Receptors |
RIDOM | http://www.ridom.de/ | rRNA (16S and ITS) sequence-based identification of medical microorganisms | |
RNABase | http://www.rnabase.org | RNA-containing structures from PDB and NDB | |
ProTherm | http://www.rtc.riken.go.jp/ | Thermodynamic data for wild-type and mutant proteins | |
Non-redundant, gene-oriented clusters: | STACK | http://www.sanbi.ac.za/Dbases.html | Sequences expressed in the human genome |
HSSP | http://www.sander.ebi.ac.uk/hssp/ | Structural families and alignments; structurally-conserved regions and domain architecture | |
GB4-RH | http://www.sanger.ac.uk/ | Genebridge4 (GB4) human radiation hybrid maps | |
Genomic Databases | ACeDB | http://www.sanger.ac.uk/Software/Acedb/ | C. elegans, S. pombe, and human sequences and genomic information |
Protein Sequence Motifs | Pfam | http://www.sanger.ac.uk/Software/Pfam/ | Multiple sequence alignments and hidden Markov models of common protein domains |
RNA Sequences | Rfam | http://www.sanger.ac.uk/Software/Rfam/ | Non-coding RNA families |
Gene Identification and Structure | HS3D | http://www.sci.unisannio.it/docenti/rampone/ | Human exon, intron and splice regions |
Gene Expression | SeedGenes | http://www.seedgenes.org | Genes essential for Arabidopsis development |
Genomic Databases | Oryzabase | http://www.shigen.nig.ac.jp/rice/oryzabase | Rice genetics and genomics |
Wnt Database | http://www.stanford.edu/ | Wnt secreted signaling molecules – proteins and phenotypes | |
Genomic Databases | ArkDB | http://www.thearkdb.org/species.html | Genome databases for farm and other animals |
Genetic and Physical Maps | DRESH | http://www.tigem.it/LOCAL/drosophila/dros.html | Human cDNA clones homologous to Drosophila mutant genes |
Comprehensive Microbial Resource | http://www.tigr.org/ | Completed microbial genomes | |
TIGR Rice Genome Annotation Resource | http://www.tigr.org/tdb/e2k1/osa1/ | Rice sequence, BAC/PAC clones and related mapping data | |
Human BAC Ends Database | http://www.tigr.org/tdb/humgen/ | Non-redundant human BAC end sequences | |
Non-redundant, gene-oriented clusters: | TIGR Gene Indices | http://www.tigr.org/tdb/index.shtml | Microbes, plants and humans |
TIGR Microbial Database | http://www.tigr.org/tdb/mdb/mdbcomplete.html | Microbial genomes and chromosomes | |
Protein Databases | TIGRFAMs | http://www.tigr.org/TIGRFAMs | Protein family resource for the functional identification of proteins |
TOPS | http://www.tops.leeds.ac.uk/ | Topology of protein structure | |
Pathology | Oral Cancer Gene Database | http://www.tumor-gene.org/Oral/oral.html | Cellular, molecular, and biological data for genes involved in oral cancer |
Pathology | Tumor Gene Family Databases (TGDBs) | http://www.tumor-gene.org/tgdf.html | Cellular, molecular, and biological data about genes involved in various cancers |
Mutation Databases | NCL Mutations | http://www.ucl.ac.uk/ncl/ | Mutations and polymorphisms in neuronal ceroid lipofuscinoses (NCL) genes |
Pathology | PGDB | http://www.ucsf.edu/pgdb/index.htm | Genes and genomic loci related to the prostate and prostatic diseases |
tRNA Sequences | http://www.uni-bayreuth.de/ | tRNA and tRNA gene sequences | |
Gene Identification and Structure | WormBase | http://www.wormbase.org | Guide to C. elegans biology |
WormBase | http://www.wormbase.org | Genomic data on C. elegans and related nematodes | |
ZFIN | http://www.zfin.org | Genetic, genomic and developmental data from zebrafish | |
Protein Sequence Motifs | SBASE | http://www3.icgeb.trieste.it/~sbasesrv/ | Annotated protein domain sequences |
HOWDY | http://www-alias.tokyo.jst.go.jp/HOWDY/ | Integrated human genomic information | |
Pseudobase | http://wwwbio.leidenuniv.nl/ | Information on RNA pseudoknots | |
SLoop | http://www-cryst.bioc.cam.ac.uk/~sloop/ | Classification of protein loops | |
BAliBASE | http://www-igbmc.u-strasbg.fr/ | Benchmark database for comparison of multiple sequence alignments | |
Genomic Databases | MitoDat | http://www-lecb.ncifcrf.gov/mitoDat/ | Mitochondrial proteins (predominantly human) |
ACTIVITY | http://wwwmgs.bionet.nsc.ru/ | Functional DNA/RNA site activity | |
SELEXdb | http://wwwmgs.bionet.nsc.ru/ | Selected DNA/RNA functional site sequences | |
Gene Identification and Structure | TRRD | http://wwwmgs.bionet.nsc.ru/mgs/dbases/trrd4/ | Transcription regulatory regions of eukaryotic genes |
Protein Databases | ASPD | http://wwwmgs.bionet.nsc.ru/mgs/gnw/aspd/ | Artificial selected proteins/peptides database |
Gene Identification and Structure | rSNP Guide | http://wwwmgs.bionet.nsc.ru/mgs/systems/rsnp/ | Single nucleotide polymorphisms in regulatory gene regions |
PIR-ALN | http://www-nbrf.georgetown.edu/ | Protein sequence alignments | |
RESID | http://www-nbrf.georgetown.edu/ | Protein structure modifications | |
Genetic and Physical Maps | G3-RH | http://www-shgc.stanford.edu/RH/ | Stanford G3 and TNG radiation hybrid maps |
LPFC | http://www-smi.stanford.edu/ | Library of protein family core structures | |
Protein Databases | SENTRA | http://www-wit.mcs.anl.gov/sentra/ | Sensory signal transduction proteins |
Genomic Databases | Phytophora Genome Consortium Database | http://xgi.ncgr.org/pgc | ESTs from Phytophthora infestans and Phytophthora sojae |
KDBI | http://xin.cz3.nus.edu.sg/group/kdbi/kdbi.asp | Kintic data on biomolecular interactions | |
HIC-Up | http://xray.bmc.uu.se/hicup/ | Structures of small molecules (hetero-compounds) | |
TRIPLES | http://ygac.med.yale.edu/triples/triples.htm | TRansposon-Insertion Phenotypes, Localization, and Expression in Saccharomyces | |
ZmDB | http://zmdb.iastate.edu/ | Maize genome database | |
Genomic Databases | PlantGDB | http://zmdb.iastate.edu/PlantGDB/ | Actively-transcribed plant genomic sequences |
Genomic Databases | ASAP | https://asap.ahabs.wisc.edu/annotation/ASAP1.htm | Systematic annotation package for community-based annotation and analysis of genomes |